Flight Engineer displayability also takes into account the main canvas enabled state (hides on F2).
Flight Engineer displayability also takes into account the main canvas enabled state (hides on F2).

 Binary files a/Assets/Plugins/KerbalEngineer.Unity.dll and b/Assets/Plugins/KerbalEngineer.Unity.dll differ
--- a/Assets/Prefabs/flight-menu.prefab
+++ b/Assets/Prefabs/flight-menu.prefab
@@ -48,6 +48,8 @@
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@@ -245,6 +247,19 @@
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@@ -305,7 +320,7 @@
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+  m_Interactable: 1
+  m_BlocksRaycasts: 1
+  m_IgnoreParentGroups: 0
 --- !u!1001 &100100000
 Prefab:
   m_ObjectHideFlags: 1

--- a/Assets/Scenes/main.unity
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--- a/KerbalEngineer.Unity/CanvasGroupFader.cs
+++ b/KerbalEngineer.Unity/CanvasGroupFader.cs
@@ -10,17 +10,25 @@
         private CanvasGroup m_CanvasGroup;
         private IEnumerator m_FadeCoroutine;
 
+        public bool fading
+        {
+            get
+            {
+                return m_FadeCoroutine != null;
+            }
+        }
+
         /// <summary>
-        ///     Fades the canvas group to a specified alpha value with optional callback.
+        ///     Fades the canvas group to a specified alpha using the supplied blocking state during fade with optional callback.
         /// </summary>
-        public void FadeTo(float alpha, Action callback = null)
+        public void FadeTo(float alpha, float duration, Action callback = null)
         {
-            if (m_CanvasGroup == null || gameObject.activeInHierarchy == false)
+            if (m_CanvasGroup == null)
             {
                 return;
             }
 
-            Fade(m_CanvasGroup.alpha, alpha, callback);
+            Fade(m_CanvasGroup.alpha, alpha, duration, callback);
         }
 
         /// <summary>
@@ -35,7 +43,6 @@
 
             alpha = Mathf.Clamp01(alpha);
             m_CanvasGroup.alpha = alpha;
-            m_CanvasGroup.interactable = !(alpha < 1.0f);
         }
 
         protected virtual void Awake()
@@ -47,32 +54,35 @@
         /// <summary>
         ///     Starts a fade from one alpha value to another with callback.
         /// </summary>
-        private void Fade(float from, float to, Action callback)
+        private void Fade(float from, float to, float duration, Action callback)
         {
             if (m_FadeCoroutine != null)
             {
                 StopCoroutine(m_FadeCoroutine);
             }
 
-            m_FadeCoroutine = FadeCoroutine(from, to, callback);
+            m_FadeCoroutine = FadeCoroutine(from, to, duration, callback);
             StartCoroutine(m_FadeCoroutine);
         }
 
         /// <summary>
         ///     Coroutine that handles the fading.
         /// </summary>
-        private IEnumerator FadeCoroutine(float from, float to, Action callback)
+        private IEnumerator FadeCoroutine(float from, float to, float duration, Action callback)
         {
             float progress = 0.0f;
 
             while (progress <= 1.0f)
             {
-                progress += Time.deltaTime;
+                progress += Time.deltaTime / duration;
                 SetAlpha(Mathf.Lerp(from, to, progress));
                 yield return null;
             }
 
+            print(m_CanvasGroup.alpha);
             callback?.Invoke();
+
+            m_FadeCoroutine = null;
         }
     }
 }

--- /dev/null
+++ b/KerbalEngineer.Unity/Flight/FlightEngineerMenu.cs
@@ -1,1 +1,98 @@
+// 
+//     Kerbal Engineer Redux
+// 
+//     Copyright (C) 2016 CYBUTEK
+// 
+//     This program is free software: you can redistribute it and/or modify
+//     it under the terms of the GNU General Public License as published by
+//     the Free Software Foundation, either version 3 of the License, or
+//     (at your option) any later version.
+// 
+//     This program is distributed in the hope that it will be useful,
+//     but WITHOUT ANY WARRANTY; without even the implied warranty of
+//     MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+//     GNU General Public License for more details.
+//     You should have received a copy of the GNU General Public License
+//     along with this program.  If not, see <http://www.gnu.org/licenses/>.
+//  
 
+namespace KerbalEngineer.Unity.Flight
+{
+    using KerbalEngineer.Flight;
+    using UnityEngine;
+    using UnityEngine.EventSystems;
+
+    public class FlightEngineerMenu : CanvasGroupFader, IPointerEnterHandler, IPointerExitHandler
+    {
+        [SerializeField]
+        private float m_FastFadeDuration = 0.2f;
+
+        [SerializeField]
+        private float m_SlowFadeDuration = 1.0f;
+
+        public void OnPointerEnter(PointerEventData eventData)
+        {
+            FadeIn();
+        }
+
+        public void OnPointerExit(PointerEventData eventData)
+        {
+            // slow-fade out if the application launcher button is off
+            if (FlightAppLauncher.instance != null && FlightAppLauncher.instance.isOn == false)
+            {
+                FadeTo(0.0f, m_SlowFadeDuration, Destroy);
+            }
+        }
+
+        protected override void Awake()
+        {
+            base.Awake();
+
+            // subscribe events
+            FlightAppLauncher.MenuClosed += MenuClosed;
+            FlightAppLauncher.ButtonHover += ButtonHover;
+        }
+
+        protected virtual void OnDestroy()
+        {
+            // unsubscribe events
+            FlightAppLauncher.MenuClosed -= MenuClosed;
+            FlightAppLauncher.ButtonHover -= ButtonHover;
+        }
+
+        protected virtual void OnEnable()
+        {
+            // set starting alpha to zero and fade in
+            SetAlpha(0.0f);
+            FadeIn();
+        }
+
+        /// <summary>
+        ///     Called when the application launcher button is hovered over.
+        /// </summary>
+        private void ButtonHover()
+        {
+            FadeIn();
+        }
+
+        /// <summary>
+        ///     Destroys the game object.
+        /// </summary>
+        private void Destroy()
+        {
+            // disable game object first due to an issue within unity 5.2.4f1 that shows a single frame at full opaque alpha just before destruction
+            gameObject.SetActive(false);
+            Destroy(gameObject);
+        }
+
+        private void FadeIn()
+        {
+            FadeTo(1.0f, m_FastFadeDuration);
+        }
+
+        private void MenuClosed()
+        {
+            FadeTo(0.0f, m_FastFadeDuration, Destroy);
+        }
+    }
+}

--- a/KerbalEngineer.Unity/KerbalEngineer.Unity.csproj
+++ b/KerbalEngineer.Unity/KerbalEngineer.Unity.csproj
@@ -32,6 +32,7 @@
   </PropertyGroup>
   <ItemGroup>
     <Compile Include="CanvasGroupFader.cs" />
+    <Compile Include="Flight\FlightEngineerMenu.cs" />
     <Compile Include="Properties\AssemblyInfo.cs" />
   </ItemGroup>
   <ItemGroup>

--- a/KerbalEngineer/Flight/DisplayStack.cs
+++ b/KerbalEngineer/Flight/DisplayStack.cs
@@ -121,7 +121,6 @@
             try
             {
                 this.Save();
-                RenderingManager.RemoveFromPostDrawQueue(0, this.Draw);
             }
             catch (Exception ex)
             {
@@ -140,7 +139,6 @@
                 this.windowId = this.GetHashCode();
                 this.InitialiseStyles();
                 this.Load();
-                RenderingManager.AddToPostDrawQueue(0, this.Draw);
                 Logger.Log("ActionMenu->Start");
             }
             catch (Exception ex)
@@ -176,7 +174,7 @@
         /// <summary>
         ///     Called to draw the display stack when the UI is enabled.
         /// </summary>
-        private void Draw()
+        private void OnGUI()
         {
             try
             {

--- a/KerbalEngineer/Flight/FlightAppLauncher.cs
+++ b/KerbalEngineer/Flight/FlightAppLauncher.cs
@@ -1,17 +1,37 @@
 namespace KerbalEngineer.Flight
 {
+    using System;
     using UnityEngine;
 
     [KSPAddon(KSPAddon.Startup.Flight, false)]
     public class FlightAppLauncher : AppLauncherButton
     {
+        private static FlightAppLauncher m_Instance;
         private GameObject m_MenuObject;
         private GameObject m_MenuPrefab;
+
+        public static event Action ButtonHover;
+        public static event Action MenuClosed;
+
+        /// <summary>
+        ///     Gets the current instance of the FlightAppLauncher object.
+        /// </summary>
+        public static FlightAppLauncher instance
+        {
+            get
+            {
+                return m_Instance;
+            }
+        }
 
         protected override void Awake()
         {
             base.Awake();
 
+            // set singleton instance
+            m_Instance = this;
+
+            // cache menu prefab
             if (m_MenuPrefab == null && AssetBundleLoader.prefabs != null)
             {
                 m_MenuPrefab = AssetBundleLoader.prefabs.LoadAsset<GameObject>("flight-menu");
@@ -20,27 +40,66 @@
 
         protected override void OnFalse()
         {
+            Close();
+        }
+
+        protected override void OnHover()
+        {
+            Open();
+            ButtonHover?.Invoke();
+        }
+
+        protected override void OnHoverOut()
+        {
+            if (isOn == false)
+            {
+                Close();
+            }
+        }
+
+        protected override void OnTrue()
+        {
+            Open();
+        }
+
+        /// <summary>
+        ///     Closes the menu.
+        /// </summary>
+        private void Close()
+        {
             if (m_MenuObject == null)
             {
                 return;
             }
 
-            Destroy(m_MenuObject);
+            if (MenuClosed != null)
+            {
+                MenuClosed();
+            }
+            else
+            {
+                Destroy(m_MenuObject);
+            }
         }
 
-        protected override void OnTrue()
+        /// <summary>
+        ///     Opens the menu.
+        /// </summary>
+        private void Open()
         {
-            if (m_MenuPrefab == null)
+            if (m_MenuPrefab == null || m_MenuObject != null)
             {
                 return;
             }
 
+            // create object
             m_MenuObject = Instantiate(m_MenuPrefab, GetAnchor(), Quaternion.identity) as GameObject;
             if (m_MenuObject == null)
             {
                 return;
             }
 
+            // set object as a child of the main canvas
             m_MenuObject.transform.SetParent(MainCanvasUtil.MainCanvas.transform);
         }
     }

--- a/KerbalEngineer/Flight/FlightEngineerCore.cs
+++ b/KerbalEngineer/Flight/FlightEngineerCore.cs
@@ -113,6 +113,11 @@
         {
             get
             {
+                if (MainCanvasUtil.MainCanvas.enabled == false)
+                {
+                    return false;
+                }
+
                 if (isCareerMode)
                 {
                     if (isKerbalLimited && FlightGlobals.ActiveVessel.GetVesselCrew().Exists(c => c.experienceTrait.TypeName == "Engineer"))

 Binary files a/Output/KerbalEngineer/KerbalEngineer and b/Output/KerbalEngineer/KerbalEngineer differ
 Binary files a/Output/KerbalEngineer/KerbalEngineer.Unity.dll and b/Output/KerbalEngineer/KerbalEngineer.Unity.dll differ
 Binary files a/Output/KerbalEngineer/KerbalEngineer.dll and b/Output/KerbalEngineer/KerbalEngineer.dll differ
 Binary files a/Output/KerbalEngineer/prefabs and b/Output/KerbalEngineer/prefabs differ
--- a/Output/KerbalEngineer/prefabs.manifest
+++ b/Output/KerbalEngineer/prefabs.manifest
@@ -1,12 +1,12 @@
 ManifestFileVersion: 0
-CRC: 3110848426
+CRC: 909216554
 Hashes:
   AssetFileHash:
     serializedVersion: 2
-    Hash: 1222d5da945826ed2afaf4cba65a3f5d
+    Hash: dd3575f8562fec685c6a2d3ff59f045e
   TypeTreeHash:
     serializedVersion: 2
-    Hash: c49d0f1c41a1b57d6af1061f875f232a
+    Hash: f4aef6f1ae036c4ba7253f0f0b1e7263
 HashAppended: 0
 ClassTypes:
 - Class: 1
@@ -29,6 +29,8 @@
   Script: {fileID: 708705254, guid: f5f67c52d1564df4a8936ccd202a3bd8, type: 3}
 - Class: 114
   Script: {fileID: 1297475563, guid: f5f67c52d1564df4a8936ccd202a3bd8, type: 3}
+- Class: 114
+  Script: {fileID: 2019631361, guid: a3a55138b08428847a08c7b48fe72efe, type: 3}
 - Class: 115
   Script: {instanceID: 0}
 - Class: 128
@@ -39,6 +41,8 @@
   Script: {instanceID: 0}
 - Class: 224
   Script: {instanceID: 0}
+- Class: 225
+  Script: {instanceID: 0}
 Assets:
 - Assets/Prefabs/flight-menu.prefab
 Dependencies: []